Gaussian Process Ranking and Estimation of Gene Expression time-series

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Documentation for package ‘gprege’ version 1.34.0

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gprege-package gprege - Gaussian Process Ranking and Estimation of Gene Expression.
compareROC Make ROC plots.
demTp63Gp1 gprege on TP63 expression time-series.
DGatta_labels_byTSNI Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
DGatta_labels_byTSNItop100 Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
DGdat_p63_case1_GL BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
DGdat_p63_case2_GL BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
DGdat_p63_case3_GL BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
exhaustivePlot Plot of the LML function by exhaustive search.
exprs_tp63_RMA Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
FragmentDellaGattaData Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
genesymbols Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
gprege Gaussian process ranking and estimation of gene expression time-series
gpregeOutput Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
rocStats Make ROC curve data.