Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

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Documentation for package ‘globaltest’ version 5.44.0

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alias-method Class "gt.object" for storing the result of the function gt
alias<- Class "gt.object" for storing the result of the function gt
alias<--method Class "gt.object" for storing the result of the function gt
bbase Goodness of fit testing in regression models using Global Test
btensor Goodness of fit testing in regression models using Global Test
coefficients-method Multinomial Logistic Regression
comparative Comparative proportions for the Global Test
covariates Global Test diagnostic plots
diagnostics Global Test diagnostic plots
draw Multiple testing correction for the Global Test
extract Class "gt.object" for storing the result of the function gt
extract-method Class "gt.object" for storing the result of the function gt
features Global Test diagnostic plots
findFocus Multiple testing correction for the Global Test
fitted.values-method Multinomial Logistic Regression
focusLevel Multiple testing correction for the Global Test
globaltest Global Test
gt Global Test
gt.object Class "gt.object" for storing the result of the function gt
gt.object-class Class "gt.object" for storing the result of the function gt
gt.options Options for globaltest package
gtBroad Gene set testing of gene set databases using Global Test
gtConcept Gene set testing of gene set databases using Global Test
gtGO Gene set testing of gene set databases using Global Test
gtKEGG Gene set testing of gene set databases using Global Test
gtKEGGREST Gene set testing of gene set databases using Global Test
gtKS Goodness of fit testing in regression models using Global Test
gtLI Goodness of fit testing in regression models using Global Test
gtPS Goodness of fit testing in regression models using Global Test
hist-method Class "gt.object" for storing the result of the function gt
inheritance Multiple testing correction for the Global Test
leafNodes Multiple testing correction for the Global Test
length-method Class "gt.object" for storing the result of the function gt
mlogit Multinomial Logistic Regression
mlogit-class Multinomial Logistic Regression
model.matrix-method Class "gt.object" for storing the result of the function gt
names-method Class "gt.object" for storing the result of the function gt
names<--method Class "gt.object" for storing the result of the function gt
p.adjust-method Class "gt.object" for storing the result of the function gt
p.value Class "gt.object" for storing the result of the function gt
p.value-method Class "gt.object" for storing the result of the function gt
reparamZ Goodness of fit testing in regression models using Global Test
residuals-method Multinomial Logistic Regression
result Class "gt.object" for storing the result of the function gt
result-method Class "gt.object" for storing the result of the function gt
reweighZ Goodness of fit testing in regression models using Global Test
show-method Class "gt.object" for storing the result of the function gt
show-method Multinomial Logistic Regression
size Class "gt.object" for storing the result of the function gt
size-method Class "gt.object" for storing the result of the function gt
sort-method Class "gt.object" for storing the result of the function gt
sterms Goodness of fit testing in regression models using Global Test
sterms-method Class "gt.object" for storing the result of the function gt
subjects Global Test diagnostic plots
subsets Class "gt.object" for storing the result of the function gt
subsets-method Class "gt.object" for storing the result of the function gt
summary-method Class "gt.object" for storing the result of the function gt
summary-method Multinomial Logistic Regression
weights-method Class "gt.object" for storing the result of the function gt
z.score Class "gt.object" for storing the result of the function gt
z.score-method Class "gt.object" for storing the result of the function gt
[-method Class "gt.object" for storing the result of the function gt
[[-method Class "gt.object" for storing the result of the function gt