Cluster Merging for Flow Cytometry Data


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Documentation for package ‘flowMerge’ version 2.38.0

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flowMerge-package Merging of mixture components for automated gating of flow cytometry data.
checkForRemoteErrors Check output of snow clusters for errors
fitPiecewiseLinreg Fit Piecewise Linear Regression for a list of flowMerge Objects
fitPiecewiseLinreg-method Methods for fitPiecewiseLinreg in flowMerge package
fitPiecewiseLinreg-methods Methods for fitPiecewiseLinreg in flowMerge package
flagOutliers Update the flagOutliers slot in a flowMerge object
flagOutliers-method Methods to update the flagOutliers slot in a flowMerge object.
flagOutliers-methods Methods to update the flagOutliers slot in a flowMerge object.
flowClust.res A flowClust model fitted to the rituximab data for 1:10 clusters.
flowMerge Merging of mixture components for automated gating of flow cytometry data.
flowMerge-class Class "flowMerge"
flowObj Create a flowObj object from a flowClust and flowFrame object
flowObj-class Class "flowObj"
getData-method Class "flowMerge"
getData-method Class "flowObj"
initPFlowMerge Initialize a SNOW cluster for use with flowMerge
map Map matrix of probabilities to class assignments.
merge Merge clusters in flow cytometry data
merge,flowObj Merge clusters in flow cytometry data
merge,flowObj,metric Merge clusters in flow cytometry data
merge,flowObj-methods Merge mixture components
merge-method Class "flowObj"
merge-methods Merge mixture components
mergeClusters Cluster merging not meant to be called by the user
mergeClusters2 Cluster merging not meant to be called by the user
NENT Extract the Normalized Entropy
pFlowClust Parallelized FlowClust
pFlowMerge Parellel call to flowMerge
plot,flowMerge Methods for plotting flowMerge and flowObj classes
plot,flowObj Methods for plotting flowMerge and flowObj classes
plot-method Class "flowMerge"
plot-method Class "flowObj"
plot-methods Methods for plotting flowMerge and flowObj classes
ptree Generate a Function to Plot The Merging Tree
RituximabFlowClustFit A flowClust model fitted to the rituximab data for 1:10 clusters.
show-method Describe a flowObj or flowMerge object
split-method Split data in a flowMerge object by cluster
split-methods Split data in a flowMerge object by cluster
summary-method Summary methods for flowMerge
updateU Update uncertainties