coexnet: An R package to build CO-EXpression NETworks from Microarray Data

Documentation for package ‘coexnet’ version 1.12.0

affy	Greene-5P01NS017771-220003: Microarray expression experiment related with Parkinson disease.
CCP	Finding Common Connection Pattern between different networks.
cofVar	Calculating the coefficient of variation for expression matrix.
createNet	Creating a co-expression network from expression matrix.
difExprs	Differential expression analysis using two different methods.
exprMat	Calculate the expression matrix from the raw expression data.
findThreshold	Find the threshold value to create a co-expression network
geneSymbol	Create a table relating probesets with genes
getAffy	Charge and create an AffyBatch object
getInfo	Download raw expression data from GEO DataSet
info	Table with the relation between the probesets and the corresponding gene.
net1	Simulated network #1
net2	Simulated network #2
ppiNet	Create a protein-protein interaction network
sharedComponents	Finding shared components between diferent networks.