appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

Documentation for package ‘appreci8R’ version 1.8.0

appreci8R-package	appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
annotate	Annotate and filter calls
appreci8	appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
appreci8R	appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
appreci8Rshiny	A user interface to perform the whole appreci8-analysis
combineOutput	Combine output of different variant calling tools
determineCharacteristics	Determine characteristics of the calls
evaluateCovAndBQ	Evaluate coverage and base quality
filterTarget	Excludes all off-target calls from further analysis.
finalFiltration	Perform final filtration according to the appreci8-algorithm
normalize	Normalize calls
Variant Filtration	appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV