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A B C F I L M N P Q R S T U W misc
| TargetSearch-package | A targeted approach for GC-MS data. |
| as.list-method | Class for representing MS data |
| as.list.tsMSdata | Class for representing MS data |
| as.list.tsMSdata-method | Class for representing MS data |
| as.list.tsProfile | Class for representing MS data |
| as.list.tsProfile-method | Class for representing MS data |
| baseline | Baseline correction - wrapper function |
| baselineCorrection | Baseline correction - Chang's method |
| baselineCorrectionQuant | Baseline correction - quantiles method |
| bin2text | Convert RI files from text to binary format and vice versa |
| CDFfiles | Class for representing samples |
| CDFfiles-method | Class for representing samples |
| CDFfiles<- | Class for representing samples |
| CDFfiles<--method | Class for representing samples |
| CDFpath | Class for representing samples |
| CDFpath-method | Class for representing samples |
| CDFpath<- | Class for representing samples |
| CDFpath<--method | Class for representing samples |
| checkRimLim | Visually check retention index marker limits |
| corRI | Example GC-MS data for TargetSearch Package |
| FAMEoutliers | FAME outlier detection |
| fileFormat | Class for representing samples |
| fileFormat-method | Class for representing samples |
| fileFormat<- | Class for representing samples |
| fileFormat<--method | Class for representing samples |
| FindAllPeaks | Extract peaks from chromatogram files - low level function |
| FindPeaks | Extract peaks from chromatogram files |
| fixRI | Fixing Retention Time Index Correction |
| fixRIcorrection | Defunct functions in package 'TargetSearch' |
| fixRIcorrection-defunct | Defunct functions in package 'TargetSearch' |
| ImportFameSettings | Retention time markers settings |
| ImportLibrary | Library import |
| ImportLibrary.msp | Library import |
| ImportLibrary.tab | Library import |
| ImportSamples | Sample definitions |
| ImportSamplesFromDir | Sample definitions |
| Intensity | Class for representing MS data |
| Intensity-method | Class for representing MS data |
| Intensity<- | Class for representing MS data |
| Intensity<--method | Class for representing MS data |
| length-method | Class for representing a reference library |
| length-method | Class for representing samples |
| libData | Class for representing a reference library |
| libData-method | Class for representing a reference library |
| libData<- | Class for representing a reference library |
| libData<--method | Class for representing a reference library |
| libId | Class for representing a reference library |
| libId-method | Class for representing a reference library |
| libName | Class for representing a reference library |
| libName-method | Class for representing a reference library |
| libName<- | Class for representing a reference library |
| libName<--method | Class for representing a reference library |
| libRI | Class for representing a reference library |
| libRI-method | Class for representing a reference library |
| libRI<- | Class for representing a reference library |
| libRI<--method | Class for representing a reference library |
| medianRILib | Median RI library correction |
| medRI | Class for representing a reference library |
| medRI-method | Class for representing a reference library |
| medRI<- | Class for representing a reference library |
| medRI<--method | Class for representing a reference library |
| metabProfile | Example GC-MS data for TargetSearch Package |
| ncdf4Convert | Method for converting CDF-3 files to CDF-4 |
| ncdf4Convert-method | Method for converting CDF-3 files to CDF-4 |
| ncdf4_convert | Convert from a NetCDF file format 3 to format 4 |
| ncdf4_convert_from_path | Convert CDF files to CDF4 from a path automatically |
| ncdf4_data_extract | Extract data ranges from a NetCDF file format 4 |
| ncdf4_plot_peak | Plot peaks from ncdf4 files |
| ncdf4_update_ri | Update retention time index on a NCDF4 file |
| NetCDFPeakFinding | Peak picking algorithm from CDF files |
| peakCDFextraction | NetCDF to R |
| peakData | Example GC-MS data for TargetSearch Package |
| peakFind | Intensities and RI matrices |
| plotAllRIdev | Plot Retention Time Index Deviation |
| plotAllSpectra | Plot a Spectra Comparison |
| plotFAME | Plot a standard marker |
| plotPeak | Plot peaks |
| plotPeakRI | Plot peak RI across samples |
| plotPeakSimple | Plot peaks - simple (old) interface |
| plotRIdev | Plot Retention Time Index Deviation |
| plotSpectra | Plot a Spectra Comparison |
| Profile | Average the correlating masses for each metabolite |
| ProfileCleanUp | Reduce redundancy of the profile |
| profileInfo | Class for representing a MS profile |
| profileInfo-method | Class for representing a MS profile |
| profileInfo<- | Class for representing a MS profile |
| profileInfo<--method | Class for representing a MS profile |
| profileInt | Class for representing a MS profile |
| profileInt-method | Class for representing a MS profile |
| profileInt<- | Class for representing a MS profile |
| profileInt<--method | Class for representing a MS profile |
| profileRI | Class for representing a MS profile |
| profileRI-method | Class for representing a MS profile |
| profileRI<- | Class for representing a MS profile |
| profileRI<--method | Class for representing a MS profile |
| profileRT | Class for representing a MS profile |
| profileRT-method | Class for representing a MS profile |
| profileRT<- | Class for representing a MS profile |
| profileRT<--method | Class for representing a MS profile |
| quantMass | Class for representing a reference library |
| quantMass-method | Class for representing a reference library |
| quantMass<- | Class for representing a reference library |
| quantMass<--method | Class for representing a reference library |
| quantMatrix | Create an intensity matrix using quantification masses |
| refLib | Class for representing a reference library |
| refLib-method | Class for representing a reference library |
| refLibrary | Example GC-MS data for TargetSearch Package |
| retIndex | Class for representing MS data |
| retIndex-method | Class for representing MS data |
| retIndex<- | Class for representing MS data |
| retIndex<--method | Class for representing MS data |
| retTime | Class for representing MS data |
| retTime-method | Class for representing MS data |
| retTime<- | Class for representing MS data |
| retTime<--method | Class for representing MS data |
| ri2rt | Retention Time Index to Retention Time convertion |
| RIcorrect | Peak picking from CDF files and RI correction |
| RIdev | Class for representing a reference library |
| RIdev-method | Class for representing a reference library |
| RIdev<- | Class for representing a reference library |
| RIdev<--method | Class for representing a reference library |
| RIfiles | Class for representing samples |
| RIfiles-method | Class for representing samples |
| RIfiles<- | Class for representing samples |
| RIfiles<--method | Class for representing samples |
| RImatrix | Example GC-MS data for TargetSearch Package |
| riMatrix | Retention Time Index Matrix |
| rimLimits | Class for representing retention index markers |
| rimLimits-method | Class for representing retention index markers |
| rimLimits<- | Class for representing retention index markers |
| rimLimits<--method | Class for representing retention index markers |
| rimMass | Class for representing retention index markers |
| rimMass-method | Class for representing retention index markers |
| rimMass<- | Class for representing retention index markers |
| rimMass<--method | Class for representing retention index markers |
| rimStandard | Class for representing retention index markers |
| rimStandard-method | Class for representing retention index markers |
| rimStandard<- | Class for representing retention index markers |
| rimStandard<--method | Class for representing retention index markers |
| RIpath | Class for representing samples |
| RIpath-method | Class for representing samples |
| RIpath<- | Class for representing samples |
| RIpath<--method | Class for representing samples |
| ri_data_extract | Extract peak data from a RI file |
| ri_plot_peak | Plot peak RI across samples - low level interface |
| rt2ri | Retention Time to Retention Time Index convertion |
| sampleData | Class for representing samples |
| sampleData-method | Class for representing samples |
| sampleData<- | Class for representing samples |
| sampleData<--method | Class for representing samples |
| sampleDays | Class for representing samples |
| sampleDays-method | Class for representing samples |
| sampleDays<- | Class for representing samples |
| sampleDays<--method | Class for representing samples |
| sampleDescription | Example GC-MS data for TargetSearch Package |
| sampleNames | Class for representing samples |
| sampleNames-method | Class for representing samples |
| sampleNames<- | Class for representing samples |
| sampleNames<--method | Class for representing samples |
| sampleRI | Sample specific RI detection |
| selMass | Class for representing a reference library |
| selMass-method | Class for representing a reference library |
| selMass<- | Class for representing a reference library |
| selMass<--method | Class for representing a reference library |
| show-method | Class for representing a reference library |
| show-method | Class for representing MS data |
| show-method | Class for representing a MS profile |
| show-method | Class for representing samples |
| spectra | Class for representing a reference library |
| spectra-method | Class for representing a reference library |
| spectra<- | Class for representing a reference library |
| spectra<--method | Class for representing a reference library |
| TargetSearch | A targeted approach for GC-MS data. |
| TargetSearch-defunct | Defunct functions in package 'TargetSearch' |
| TargetSearchGUI | Defunct functions in package 'TargetSearch' |
| text2bin | Convert RI files from text to binary format and vice versa |
| topMass | Class for representing a reference library |
| topMass-method | Class for representing a reference library |
| topMass<- | Class for representing a reference library |
| topMass<--method | Class for representing a reference library |
| TSExample | Example GC-MS data for TargetSearch Package |
| tsLib-class | Class for representing a reference library |
| tsMSdata-class | Class for representing MS data |
| tsProfile-class | Class for representing a MS profile |
| tsRim-class | Class for representing retention index markers |
| tsSample-class | Class for representing samples |
| tsUpdate | Methods for Updating TargetSearch objects 'tsUpdate' |
| tsUpdate-method | Methods for Updating TargetSearch objects 'tsUpdate' |
| updateRI | Updating Time Index correction |
| Write.Results | Save TargetSearch result objects into files |
| writeLibText | Save a library object in text format |
| writeMSP | Save spectra in MSP format to be visualized in NIST |
| $-method | Class for representing a reference library |
| $-method | Class for representing samples |
| [-method | Class for representing a reference library |
| [-method | Class for representing retention index markers |
| [-method | Class for representing samples |