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| createClusterMST | Minimum spanning trees on cluster centroids |
| createClusterMST-method | Minimum spanning trees on cluster centroids |
| difftest | difftest |
| exprmclust | exprmclust |
| lpsdata | Sinlge-cell RNA-seq data for BMDC cells before and after LPS stimulation |
| mapCellsToEdges | Map cells to edges |
| mapCellsToEdges-method | Map cells to edges |
| orderCells | Compute pseudotimes from the MST |
| orderscore | orderscore |
| perCellEntropy | Compute the per-cell entropy |
| perCellEntropy-method | Compute the per-cell entropy |
| plotmclust | plotmclust |
| preprocess | preprocess |
| quickPseudotime | Quick MST-based pseudotime |
| quickPseudotime-method | Quick MST-based pseudotime |
| reportEdges | Report MST edge coordinates |
| reportEdges-method | Report MST edge coordinates |
| rowmean | Compute column means of a matrix based on a grouping variable |
| singlegeneplot | singlegeneplot |
| testPseudotime | Test for differences along pseudotime |
| testPseudotime-method | Test for differences along pseudotime |
| TSCAN | TSCAN: Tools for Single-Cell ANalysis |
| TSCANorder | TSCANorder |
| TSCANui | TSCANui |