Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

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Documentation for package ‘SIMD’ version 1.8.0

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SIMD-package A method to infer the methylation expression level for each CpG sites.
EMalgorithm EM algorithm to infer CpG sites.
emalgth Calculate the probability on condition that the sums equal to 1.
emalgth1 Calculate the probability on condition that the sums more than 1.
EMtest Inferring the methylation expression level of single sites.
probBinom Compute P-values for Medip-seq and MRE-seq data.