$-method | Input parameters InputParam |
$<--method | Input parameters InputParam |
+-method | Pipeline |
arguments | cwlParam methods |
arguments<- | cwlParam methods |
baseCommand | cwlParam methods |
baseCommand<- | cwlParam methods |
cwlClass | cwlParam methods |
cwlClass<- | cwlParam methods |
cwlParam | Parameters for CWL |
cwlParam-class | Parameters for CWL |
cwlShiny | cwlShiny |
cwlStepParam | cwlStepParam |
cwlStepParam-class | cwlStepParam |
cwlVersion | cwlParam methods |
cwlVersion<- | cwlParam methods |
Dirent | requireDocker |
extensions | cwlParam methods |
extensions<- | cwlParam methods |
hints | cwlParam methods |
hints<- | cwlParam methods |
InputArrayParam | InputArrayParam |
InputArrayParam-class | InputArrayParam |
InputParam | Input parameters InputParam |
InputParam-class | Input parameters InputParam |
InputParamList | InputParamList |
InputParamList-class | InputParamList |
inputs | InputParamList |
OutputArrayParam | Output array parameters |
OutputArrayParam-class | Output array parameters |
OutputParam | Output parameters |
OutputParam-class | Output parameters |
OutputParamList | OutputParamList |
OutputParamList-class | OutputParamList |
outputs | OutputParamList |
plotCWL | plotCWL |
Rcwl | Rcwl |
readCWL | Read CWL Function to read CWL command or workflow files. |
requireDocker | requireDocker |
requireInitialWorkDir | requireDocker |
requireJS | requireDocker |
requireManifest | requireDocker |
requirements | cwlParam methods |
requirements<- | cwlParam methods |
requireMultipleInput | requireDocker |
requireScatter | requireDocker |
requireSoftware | requireDocker |
requireStepInputExpression | requireDocker |
requireSubworkflow | requireDocker |
runCWL | run cwlParam |
runCWLBatch | run CWL with batchtools |
runs | runs |
short | short |
stdOut | cwlParam methods |
stdOut<- | cwlParam methods |
Step | Step function |
stepInParam | stepInParam |
stepInParam-class | stepInParam |
stepInParamList | stepInParamList |
stepInParamList-class | stepInParamList |
stepParam | stepParam |
stepParam-class | stepParam |
stepParamList | stepParamList |
stepParamList-class | stepParamList |
steps | Steps |
steps<- | Steps |
writeCWL | Write CWL |