dataProcessPlotsTMTPTM |
Visualization for explanatory data analysis - TMT experiment |
example.contrast.matrix |
Example contrast matrix for input into the groupComparisonTMTPTM function |
groupComparisonTMTPTM |
Model PTM and/or protein data and make adjustments if needed |
model.results.contrast |
Ouput of groupComparisonTMTPTM for specific comparisons of interest |
model.results.pairwise |
Ouput of groupComparisonTMTPTM for full pairwise test |
MSstatsTMTPTM |
MSstatsTMTPTM: A package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling. |
quant.msstats.protein |
Example of output from proteinSummarizaiton function for Protein data |
quant.msstats.ptm |
Example of output from proteinSummarizaiton function for PTM data |
raw.protein |
Example of input Protein dataset for TMT experiments. |
raw.ptm |
Example of input PTM dataset for TMT experiments. |