DBI to construct MSEA-related package

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Documentation for package ‘MSEADbi’ version 1.0.0

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class:MSEADb MSEADb objects
columns A function to return the columns of MSEA that user can retrieve
columns-method A function to return the columns of MSEA that user can retrieve
dbconn A function to return the connection to sqlite3 file
dbconn-method A function to return the connection to sqlite3 file
dbfile A function to return the directory that the sqlite3 file stored
dbfile-method A function to return the directory that the sqlite3 file stored
dbInfo A function to return the database information
dbInfo-method A function to return the database information
dbschema A function to return the schema of sqlite-database
dbschema-method A function to return the schema of sqlite-database
generic, mseaListPathwaySubjects A function to return the subject of pathways used in the package
generic,columns A function to return the columns of MSEA that user can retrieve
generic,dbconn A function to return the connection to sqlite3 file
generic,dbfile A function to return the directory that the sqlite3 file stored
generic,dbInfo A function to return the database information
generic,dbschema A function to return the schema of sqlite-database
generic,keys A function defined by AnnotationDbi to return the keys
generic,keytypes A function to return the columns that user can specified in select function
generic,mseaNomenclature A function to return the scientific name
generic,mseaPackageName A function to return the package name
generic,mseaVersion A function to return the MSEA data source version of package
generic,select select function defined by AnnotationDbi-class
generic,species A function to return the name of organism
keys A function defined by AnnotationDbi to return the keys
keys-method A function defined by AnnotationDbi to return the keys
keytypes A function to return the columns that user can specified in select function
keytypes-method A function to return the columns that user can specified in select function
makeMSEAPackage Making MSEADb packages from corresponding table as single data frame.
MSEADb MSEADb objects
MSEADb-class MSEADb objects
mseaListPathwaySubjects A function to return the subject of pathways used in the package
mseaListPathwaySubjects-method A function to return the subject of pathways used in the package
mseaNomenclature A function to return the scientific name
mseaNomenclature-method A function to return the scientific name
mseaPackageName A function to return the package name
mseaPackageName-method A function to return the package name
mseaVersion A function to return the MSEA data source version of package
mseaVersion-method A function to return the MSEA data source version of package
select select function defined by AnnotationDbi-class
select-method select function defined by AnnotationDbi-class
species A function to return the name of organism
species-method A function to return the name of organism