class:MSEADb |
MSEADb objects |
columns |
A function to return the columns of MSEA that user can retrieve |
columns-method |
A function to return the columns of MSEA that user can retrieve |
dbconn |
A function to return the connection to sqlite3 file |
dbconn-method |
A function to return the connection to sqlite3 file |
dbfile |
A function to return the directory that the sqlite3 file stored |
dbfile-method |
A function to return the directory that the sqlite3 file stored |
dbInfo |
A function to return the database information |
dbInfo-method |
A function to return the database information |
dbschema |
A function to return the schema of sqlite-database |
dbschema-method |
A function to return the schema of sqlite-database |
generic, mseaListPathwaySubjects |
A function to return the subject of pathways used in the package |
generic,columns |
A function to return the columns of MSEA that user can retrieve |
generic,dbconn |
A function to return the connection to sqlite3 file |
generic,dbfile |
A function to return the directory that the sqlite3 file stored |
generic,dbInfo |
A function to return the database information |
generic,dbschema |
A function to return the schema of sqlite-database |
generic,keys |
A function defined by AnnotationDbi to return the keys |
generic,keytypes |
A function to return the columns that user can specified in select function |
generic,mseaNomenclature |
A function to return the scientific name |
generic,mseaPackageName |
A function to return the package name |
generic,mseaVersion |
A function to return the MSEA data source version of package |
generic,select |
select function defined by AnnotationDbi-class |
generic,species |
A function to return the name of organism |
keys |
A function defined by AnnotationDbi to return the keys |
keys-method |
A function defined by AnnotationDbi to return the keys |
keytypes |
A function to return the columns that user can specified in select function |
keytypes-method |
A function to return the columns that user can specified in select function |
makeMSEAPackage |
Making MSEADb packages from corresponding table as single data frame. |
MSEADb |
MSEADb objects |
MSEADb-class |
MSEADb objects |
mseaListPathwaySubjects |
A function to return the subject of pathways used in the package |
mseaListPathwaySubjects-method |
A function to return the subject of pathways used in the package |
mseaNomenclature |
A function to return the scientific name |
mseaNomenclature-method |
A function to return the scientific name |
mseaPackageName |
A function to return the package name |
mseaPackageName-method |
A function to return the package name |
mseaVersion |
A function to return the MSEA data source version of package |
mseaVersion-method |
A function to return the MSEA data source version of package |
select |
select function defined by AnnotationDbi-class |
select-method |
select function defined by AnnotationDbi-class |
species |
A function to return the name of organism |
species-method |
A function to return the name of organism |