Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

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Documentation for package ‘MMUPHin’ version 1.3.0

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adjust_batch Zero-inflated empirical Bayes adjustment of batch effect in compositional feature abundance data
continuous_discover Unsupervised meta-analytical discovery and validation of continuous structures in microbial abundance data
CRC_abd Species level feature abundance data of five public CRC studies
CRC_meta Sample metadata of five public CRC studies
discrete_discover Unsupervised meta-analytical discovery and validation of discrete clustering structures in microbial abundance data
lm_meta Covariate adjusted meta-analytical differential abundance testing
vaginal_abd Species level feature abundance data of two public vaginal studies
vaginal_meta Sample metadata of two public vaginal studies