Make Biological Sense of Gene Set Enrichment Analysis Outputs

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Documentation for package ‘GSEAmining’ version 1.0.0

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clust_groups clust_groups
clust_group_cores clust_group_cores
clust_group_terms clust_group_terms
genesets_sel Selected gene sets as test
gm_clust gm_clust: GSEAmining cluster object
gm_dendplot gm_dendplot: GSEAmining dendrogram plotter
gm_enrichcores gm_enrichcores: GSEAmining core enrichment genes
gm_enrichreport gm_enrichreport: GSEAmining Enrichment Report
gm_enrichterms gm_enrichterms: GSEAmining enriched terms
gm_filter gm_filter: GSEAmining GSEA output filter
stop_words Stop words. Eliminates the first word of the gene sets from MSigDb that relate to the origin of the gene set. Additionally it eliminates words that do not add a lot of significance such as prepositions or adverbs among others.