Brain Span Atlas in Biobase Expressionset R toolset

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Documentation for package ‘BrainSABER’ version 1.0.0

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.CellScabbard The CellScabbard class
AIBSARNAid Methods for the CellScabbard class
AIBSARNAid<- Methods for the CellScabbard class
buildAIBSARNA Function to create a SummarizedExperiment containing BrainSpan Data
CellScabbard The CellScabbard class
CellScabbard-class The CellScabbard class
CellScabbard-method Methods for the CellScabbard class
CellScabbard-methods Methods for the CellScabbard class
dataSetId Methods for the CellScabbard class
dataSetId<- Methods for the CellScabbard class
getExampleVector Get an example vector for specified genes
getExternalVector getExternalVector
getRelevantGenes Get a subset of AIBSARNA using a Gene Expression Vector
getSimDataFrame Get Age, Structure Acronym, and Similarity Scores Data Frame
getSimMatrix Get Age, Structure Acronym, and Similarity Score Matrix
getSimScores Get Similarity Scoring for a Gene Expression Vector
getTrimmedExternalSet Get a trimmed version of an external data set
getUNDmatrix getUNDmatrix
relevantGenes Methods for the CellScabbard class
relevantGenes<- Methods for the CellScabbard class
similarityDFs Methods for the CellScabbard class
similarityDFs<- Methods for the CellScabbard class
similarityMatrices Methods for the CellScabbard class
similarityMatrices<- Methods for the CellScabbard class
similarityScores Methods for the CellScabbard class
similarityScores<- Methods for the CellScabbard class
UNDmatrices Methods for the CellScabbard class
UNDmatrices<- Methods for the CellScabbard class