mitoODEdata

DOI: 10.18129/B9.bioc.mitoODEdata    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see mitoODEdata.

Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Bioconductor version: 3.11

This package contains the experimental data (assay annotation, siRNA annotation, time-lapse cell counts) associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay". The data ultimately come from the Mitocheck assay reported in "Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes" (Neumann, Walter et al, Nature 2010).

Author: Gregoire Pau

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mitoODEdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mitoODEdata")

 

PDF	R Script	Mitoode data
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Genome
Version	1.24.1
License	LGPL
Depends	R (>= 2.14.0)
Imports	methods, graphics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	mitoODE
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mitoODEdata_1.24.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/mitoODEdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mitoODEdata
Package Short Url	https://bioconductor.org/packages/mitoODEdata/
Package Downloads Report	Download Stats