RTCGA.mutations

DOI: 10.18129/B9.bioc.RTCGA.mutations    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mutations.

Mutations datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.11

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.mutations")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.mutations")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.mutations")

 

HTML R Script Using RTCGA to download mutations data as included in RTCGA.mutations
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation Data, ExperimentData
Version 20151101.18.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.mutations_20151101.18.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.mutations
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.mutations
Package Short Url https://bioconductor.org/packages/RTCGA.mutations/
Package Downloads Report Download Stats

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