DOI: 10.18129/B9.bioc.ABAData    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ABAData.

Averaged gene expression in human brain regions from Allen Brain Atlas

Bioconductor version: 3.11

Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

Author: Steffi Grote

Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>

Citation (from within R, enter citation("ABAData")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script ABAData: gene expression data to use with enrichment analysis package ABAEnrichment
PDF   Reference Manual


biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData
Version 1.18.0
License GPL (>= 2)
Depends R (>= 3.2)
Suggests BiocStyle, knitr, ABAEnrichment
Depends On Me
Imports Me ABAEnrichment
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABAData_1.18.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ABAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABAData
Package Short Url https://bioconductor.org/packages/ABAData/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: