Returns a data.table with one row per gene set. This data.table contains columns:

set

name of gene set

cond_Z

Z statistic for continuous component

cont_P

wald P value

cont_effect

difference in continuous regression coefficients between null and test sets (ie, the numerator of the Z-statistic.)

disc_Z

Z statistic for discrete

disc_P

wald P value

disc_effect

difference in discrete regression coefficients between null and test sets.

combined_Z

combined discrete and continuous Z statistic using Stouffer's method

combined_P

combined P value

combined_adj

FDR adjusted combined P value

# S4 method for GSEATests
summary(object, ...)

Arguments

object

A GSEATests object

...

passed to calcZ

Value

data.table

See also

gseaAfterBoot

Examples

## See the examples in gseaAfterBoot example(gseaAfterBoot)
#> Warning: no help found for ‘gseaAfterBoot’