Filter out genes that have less than some percent threshold expression across all libraries
filterLowExpressedGenes(assay, threshold = 0.1)
assay | a |
---|---|
threshold | a |
SingleCellAssay
data(vbetaFA) filterLowExpressedGenes(vbetaFA)#> Filtered out 72.00 percent of genes at 10.00 percent threshold#> class: FluidigmAssay #> dim: 54 456 #> metadata(0): #> assays(1): Et #> rownames(54): BAX BCL2 ... TNFRSF9 TNFSF10 #> rowData names(2): Gene primerid #> colnames(456): Sub01 1 A01 Sub01 1 A02 ... Sub02 3 H10 Sub02 3 H11 #> colData names(9): Number.of.Cells Population ... Time wellKey #> reducedDimNames(0): #> spikeNames(0):