### Version 1.3.1 ADDITIONAL FUNCTIONS: *** BUG FIXES: - scale_fill_gradient2 throws a need at least two non-NA values to interpolate error. Leaving the default colors resolve the issue ### Version 1.1.1 ADDITIONAL FUNCTIONS: *** BUG FIXES: - cgdsr new caseList naming was bringing to no mutational data. now fixed - If _tcga_pan_can_atlas_2018 data are requested, _tcga and _tcga_pub are removed ### Version 0.99.18 ADDITIONAL FUNCTIONS: *** BUG FIXES: - hg19 biomart version changed from feb2014.archive.ensembl.org to grch37.ensembl.org ### Version 0.99.17 ADDITIONAL FUNCTIONS: *** BUG FIXES: - cgdsr URL changed ### Version 0.99.16 ADDITIONAL FUNCTIONS: *** BUG FIXES: - removed toc_float in the vignette - chromosomes accepted only in the format 1:22,X,Y,MT ### Version 0.99.15 No changes. Just a rebump ### Version 0.99.14 ADDITIONAL FUNCTIONS: *** BUG FIXES: - some lines shortened - dependency to R 3.6 instead of 3.5 ### Version 0.99.13 ADDITIONAL FUNCTIONS: *** BUG FIXES: - removed figure size in the vignette ### Version 0.99.12 ADDITIONAL FUNCTIONS: - Add Luca Mazarella as author - add matrixStats function to improve apply speed *** BUG FIXES: - remove mclapply - remove environment calls - NEWS file moved to the main folder - %+% and %++% removed - accessors functions used in the code - code lines reduced to 80 characters - general cleanup ### Version 0.99.11 No changes. Just a rebump ### Version 0.99.10 No changes. Just a rebump ### Version 0.99.9 ADDITIONAL FUNCTIONS: *** BUG FIXES: - No tests and less examples ### Version 0.99.8 ADDITIONAL FUNCTIONS: *** BUG FIXES: - Faster vignette, faster examples ### Version 0.99.7 ADDITIONAL FUNCTIONS: - Add a designed panel example - Even shorter example dataset *** BUG FIXES: - Error in transforming aminoacid sequence to genomic ### Version 0.99.6 ADDITIONAL FUNCTIONS: - Smaller example dataset *** BUG FIXES: ### Version 0.99.5 ADDITIONAL FUNCTIONS: *** BUG FIXES: - reference to cgdsr code back into the manual ### Version 0.99.4 ADDITIONAL FUNCTIONS: - add smaller datasets for examples *** BUG FIXES: - faster and shorter examples - better error handling for empty data - tiny typo - bug fix in panelOptimizer - some code cleanup ### Version 0.99.3 ADDITIONAL FUNCTIONS: *** BUG FIXES: - Minor style improvements (warnings and notes from BioCheck) - Bug in PrecisionTrialDrawer-package.Rd example ### Version 0.99.2 ADDITIONAL FUNCTIONS: - More informative show method for CancerPanel object - Add NEWS and CITATION files *** BUG FIXES: - Minor bug fixes (warnings and notes from BioCheck) - Faster examples ### Version 0.99.1 ADDITIONAL FUNCTIONS: *** BUG FIXES: - major bug fix in protein to genomic coordinates transformation ### Version 0.99.0 First Bioconductor submission