DOI: 10.18129/B9.bioc.triform    

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see triform.

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: 3.11

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]

Maintainer: Thomas Carroll <tc.infomatics at>

Citation (from within R, enter citation("triform")):


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PDF R Script Triform users guide
PDF   Reference Manual


biocViews ChIPSeq, Sequencing, Software
Version 1.29.0
In Bioconductor since BioC 2.11 (R-2.15) (8 years)
License GPL-2
Depends R (>= 2.11.0), IRanges, yaml
Imports BiocGenerics, IRanges(>= 2.5.27), yaml
Suggests RUnit
Depends On Me
Imports Me
Suggests Me
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