tRNAscanImport

DOI: 10.18129/B9.bioc.tRNAscanImport    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see tRNAscanImport.

Importing a tRNAscan-SE result file as GRanges object

Bioconductor version: 3.11

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")

 

HTML	R Script	tRNAscanImport
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version	1.8.1
In Bioconductor since	BioC 3.7 (R-3.5) (2.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5), GenomicRanges, tRNA
Imports	methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
SystemRequirements
Enhances
URL	https://github.com/FelixErnst/tRNAscanImport
BugReports	https://github.com/FelixErnst/tRNAscanImport/issues
Depends On Me
Imports Me
Suggests Me	Structstrings, tRNA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNAscanImport_1.8.1.tar.gz
Windows Binary	tRNAscanImport_1.8.1.zip
macOS 10.13 (High Sierra)	tRNAscanImport_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tRNAscanImport
Package Short Url	https://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report	Download Stats