scDblFinder

DOI: 10.18129/B9.bioc.scDblFinder    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see scDblFinder.

scDblFinder

Bioconductor version: 3.11

Efficient identification of doublets in single-cell RNAseq directly from counts using overclustering-based generation of artifical doublets.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scDblFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scDblFinder")

 

HTML	R Script	scDblFinder
PDF		Reference Manual

Details

biocViews	Preprocessing, RNASeq, SingleCell, Software
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (1 year)
License	GPL-3
Depends	R (>= 4.0)
Imports	igraph, Matrix, matrixStats, BiocParallel, BiocNeighbors, BiocSingular, SummarizedExperiment, SingleCellExperiment, scran, scater, data.table, dplyr, ggplot2, randomForest, graphics, methods, stats, DelayedArray
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/plger/scDblFinder
BugReports	https://github.com/plger/scDblFinder/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scDblFinder_1.2.0.tar.gz
Windows Binary	scDblFinder_1.2.0.zip
macOS 10.13 (High Sierra)	scDblFinder_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scDblFinder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scDblFinder
Package Short Url	https://bioconductor.org/packages/scDblFinder/
Package Downloads Report	Download Stats