readat

DOI: 10.18129/B9.bioc.readat    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see readat.

Functionality to Read and Manipulate SomaLogic ADAT files

Bioconductor version: 3.11

This package contains functionality to import, transform and annotate data from ADAT files generated by the SomaLogic SOMAscan platform.

Author: Richard Cotton <richierocks at gmail.com>, Aditya Bhagwat <adb2018 at qatar-med.cornell.edu>

Maintainer: Richard Cotton <richierocks at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("readat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, GeneExpression, OneChannel, ProprietaryPlatforms, Proteomics, Software
Version	1.14.0
In Bioconductor since	BioC 3.4 (R-3.3) (4 years)
License	GPL-3
Depends	R (>= 3.4.0)
Imports	assertive.base (>= 0.0-7), assertive.files (>= 0.0-2), assertive.numbers (>= 0.0-2), assertive.properties (>= 0.0-4), assertive.sets (>= 0.0-3), assertive.types (>= 0.0-3), Biobase(>= 2.34.0), data.table (>= 1.10.4), dplyr (>= 0.5.0), magrittr (>= 1.5), openxlsx (>= 4.0.17), pathological (>= 0.1-2), reshape2 (>= 1.4.2), stats, stringi (>= 1.1.5), SummarizedExperiment(>= 1.4.0), testthat (>= 1.0.2), tidyr (>= 0.6.2), utils
LinkingTo
Suggests	knitr, MSnbase, rmarkdown, withr
SystemRequirements
Enhances
URL	https://bitbucket.org/graumannlabtools/readat
BugReports	https://bitbucket.org/graumannlabtools/readat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/readat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/readat
Package Short Url	https://bioconductor.org/packages/readat/
Package Downloads Report	Download Stats