DOI: 10.18129/B9.bioc.rGADEM    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see rGADEM.

de novo motif discovery

Bioconductor version: 3.11

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

Maintainer: Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Citation (from within R, enter citation("rGADEM")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script The rGADEM users guide
PDF   Reference Manual


biocViews ChIPSeq, ChIPchip, Microarray, MotifDiscovery, Sequencing, Software
Version 2.36.0
In Bioconductor since BioC 2.6 (R-2.11) (10.5 years)
License Artistic-2.0
Depends R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo
Imports Biostrings, GenomicRanges, methods, graphics, seqLogo
Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer
Depends On Me
Imports Me MotIV, TCGAWorkflow
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rGADEM_2.36.0.tar.gz
Windows Binary rGADEM_2.36.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) rGADEM_2.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rGADEM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rGADEM
Package Short Url https://bioconductor.org/packages/rGADEM/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: