DOI: 10.18129/B9.bioc.proteoQC    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control

Bioconductor version: 3.11

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at>, Laurent Gatto <lg390 at>

Maintainer: Bo Wen <wenbo at>

Citation (from within R, enter citation("proteoQC")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 3.0 (R-3.1) (6 years)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
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