plyranges

DOI: 10.18129/B9.bioc.plyranges    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see plyranges.

A fluent interface for manipulating GenomicRanges

Bioconductor version: 3.11

A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.

Author: Stuart Lee [aut, cre], Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb]

Maintainer: Stuart Lee <lee.s at wehi.edu.au>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plyranges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyranges")

 

HTML	R Script	Introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep
Version	1.8.0
In Bioconductor since	BioC 3.7 (R-3.5) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4)
Imports	methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2
SystemRequirements
Enhances
URL
BugReports	https://github.com/sa-lee/plyranges
Depends On Me
Imports Me	BUSpaRse, fluentGenomics, methylCC
Suggests Me	StructuralVariantAnnotation
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plyranges_1.8.0.tar.gz
Windows Binary	plyranges_1.8.0.zip
macOS 10.13 (High Sierra)	plyranges_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plyranges
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plyranges
Package Short Url	https://bioconductor.org/packages/plyranges/
Package Downloads Report	Download Stats