This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see plotGrouper.
Bioconductor version: 3.11
A shiny app-based GUI wrapper for ggplot with built-in statistical analysis. Import data from file and use dropdown menus and checkboxes to specify the plotting variables, graph type, and look of your plots. Once created, plots can be saved independently or stored in a report that can be saved as a pdf. If new data are added to the file, the report can be refreshed to include new data. Statistical tests can be selected and added to the graphs. Analysis of flow cytometry data is especially integrated with plotGrouper. Count data can be transformed to return the absolute number of cells in a sample (this feature requires inclusion of the number of beads per sample and information about any dilution performed).
Author: John D. Gagnon [aut, cre]
Maintainer: John D. Gagnon <john.gagnon.42 at gmail.com>
Citation (from within R,
enter citation("plotGrouper")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("plotGrouper")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plotGrouper")
HTML | R Script | plotGrouper |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, FlowCytometry, GUI, GraphAndNetwork, ImmunoOncology, MultipleComparison, Software, StatisticalMethod |
Version | 1.6.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (2 years) |
License | GPL-3 |
Depends | R (>= 3.5) |
Imports | ggplot2 (>= 3.0.0), dplyr (>= 0.7.6), tidyr (>= 0.2.0), tibble (>= 1.4.2), stringr (>= 1.3.1), readr (>= 1.1.1), readxl (>= 1.1.0), scales (>= 1.0.0), stats, grid, gridExtra (>= 2.3), egg (>= 0.4.0), gtable (>= 0.2.0), ggpubr (>= 0.1.8), shiny (>= 1.1.0), shinythemes (>= 1.1.1), colourpicker (>= 1.0), magrittr (>= 1.5), Hmisc (>= 4.1.1), rlang (>= 0.2.2) |
LinkingTo | |
Suggests | knitr, htmltools, BiocStyle, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | https://jdgagnon.github.io/plotGrouper/ |
BugReports | https://github.com/jdgagnon/plotGrouper/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | plotGrouper_1.6.0.tar.gz |
Windows Binary | plotGrouper_1.6.0.zip |
macOS 10.13 (High Sierra) | plotGrouper_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/plotGrouper |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plotGrouper |
Package Short Url | https://bioconductor.org/packages/plotGrouper/ |
Package Downloads Report | Download Stats |
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