This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see pepXMLTab.
Bioconductor version: 3.11
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R,
enter citation("pepXMLTab")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("pepXMLTab")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pepXMLTab")
R Script | Introduction to pepXMLTab | |
Reference Manual | ||
Text | NEWS |
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0.1) |
Imports | XML (>= 3.98-1.1) |
LinkingTo | |
Suggests | RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | pepXMLTab_1.22.0.tar.gz |
Windows Binary | pepXMLTab_1.22.0.zip |
macOS 10.13 (High Sierra) | pepXMLTab_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pepXMLTab |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pepXMLTab |
Package Short Url | https://bioconductor.org/packages/pepXMLTab/ |
Package Downloads Report | Download Stats |
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