netbenchmark

DOI: 10.18129/B9.bioc.netbenchmark    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see netbenchmark.

Benchmarking of several gene network inference methods

Bioconductor version: 3.11

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netbenchmark")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netbenchmark")

 

HTML	R Script	Netbenchmark
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version	1.19.0
In Bioconductor since	BioC 3.1 (R-3.2) (5.5 years)
License	CC BY-NC-SA 4.0
Depends	grndata(>= 0.99.3)
Imports	Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo	Rcpp
Suggests	RUnit, BiocGenerics, knitr, graph
SystemRequirements
Enhances
URL	https://imatge.upc.edu/netbenchmark/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netbenchmark_1.19.0.tar.gz
Windows Binary	netbenchmark_1.19.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/netbenchmark
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netbenchmark
Package Short Url	https://bioconductor.org/packages/netbenchmark/
Package Downloads Report	Download Stats