miRcomp

DOI: 10.18129/B9.bioc.miRcomp    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see miRcomp.

Tools to assess and compare miRNA expression estimatation methods

Bioconductor version: 3.11

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Author: Matthew N. McCall <mccallm at gmail.com>, Lauren Kemperman <lkemperm at u.rochester.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRcomp")

 

HTML	R Script	Assessment and comparison of miRNA expression estimation methods (miRcomp)
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Preprocessing, QualityControl, Software, qPCR
Version	1.18.0
In Bioconductor since	BioC 3.2 (R-3.2) (5 years)
License	GPL-3 | file LICENSE
Depends	R (>= 3.2), Biobase(>= 2.22.0), miRcompData
Imports	utils, methods, graphics, KernSmooth, stats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRcomp_1.18.0.tar.gz
Windows Binary	miRcomp_1.18.0.zip
macOS 10.13 (High Sierra)	miRcomp_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRcomp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRcomp
Package Short Url	https://bioconductor.org/packages/miRcomp/
Package Downloads Report	Download Stats