globalSeq

DOI: 10.18129/B9.bioc.globalSeq    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see globalSeq.

Global Test for Counts

Bioconductor version: 3.11

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>

Citation (from within R, enter citation("globalSeq")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")

 

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Details

biocViews DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA
Version 1.16.1
In Bioconductor since BioC 3.3 (R-3.3) (4.5 years)
License GPL-3
Depends R (>= 3.0.0)
Imports
LinkingTo
Suggests knitr, testthat, SummarizedExperiment, S4Vectors
SystemRequirements
Enhances
URL https://github.com/rauschenberger/globalSeq
BugReports https://github.com/rauschenberger/globalSeq/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package globalSeq_1.16.1.tar.gz
Windows Binary globalSeq_1.16.1.zip
macOS 10.13 (High Sierra) globalSeq_1.16.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/globalSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/globalSeq
Package Short Url https://bioconductor.org/packages/globalSeq/
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