This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see flowMap.
Bioconductor version: 3.11
flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.
Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>
Citation (from within R,
enter citation("flowMap")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("flowMap")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowMap")
R Script | Mapping cell populations in flow cytometry data flowMap-FR | |
Reference Manual | ||
Text | NEWS |
biocViews | FlowCytometry, ImmunoOncology, MultipleComparison, Software |
Version | 1.26.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (7 years) |
License | GPL (>=2) |
Depends | R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14) |
Imports | |
LinkingTo | |
Suggests | BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | flowMap_1.26.0.tar.gz |
Windows Binary | flowMap_1.26.0.zip |
macOS 10.13 (High Sierra) | flowMap_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/flowMap |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowMap |
Package Short Url | https://bioconductor.org/packages/flowMap/ |
Package Downloads Report | Download Stats |
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