fastLiquidAssociation

DOI: 10.18129/B9.bioc.fastLiquidAssociation    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see fastLiquidAssociation.

functions for genome-wide application of Liquid Association

Bioconductor version: 3.11

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author: Tina Gunderson

Maintainer: Tina Gunderson <gunderson.tina at gmail.com>

Citation (from within R, enter citation("fastLiquidAssociation")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastLiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fastLiquidAssociation")

 

PDF R Script fastLiquidAssociation Vignette
PDF   Reference Manual

Details

biocViews CellBiology, GeneExpression, Genetics, Pathways, Software
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (6.5 years)
License GPL-2
Depends methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils
Imports WGCNA, impute, preprocessCore
LinkingTo
Suggests GOstats, yeastCC, org.Sc.sgd.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fastLiquidAssociation_1.24.0.tar.gz
Windows Binary fastLiquidAssociation_1.24.0.zip
macOS 10.13 (High Sierra) fastLiquidAssociation_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fastLiquidAssociation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fastLiquidAssociation
Package Short Url https://bioconductor.org/packages/fastLiquidAssociation/
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