This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ctsGE.
Bioconductor version: 3.11
Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.
Author: Michal Sharabi-Schwager [aut, cre], Ron Ophir [aut]
Maintainer: Michal Sharabi-Schwager <michalsharabi at gmail.com>
Citation (from within R,
enter citation("ctsGE")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ctsGE")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ctsGE")
HTML | R Script | ctsGE Package |
Reference Manual |
biocViews | Bayesian, Clustering, DifferentialExpression, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
Version | 1.14.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (4 years) |
License | GPL-2 |
Depends | R (>= 3.2) |
Imports | ccaPP, ggplot2, limma, reshape2, shiny, stats, stringr, utils |
LinkingTo | |
Suggests | BiocStyle, dplyr, DT, GEOquery, knitr, pander, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/michalsharabi/ctsGE |
BugReports | https://github.com/michalsharabi/ctsGE/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ctsGE_1.14.0.tar.gz |
Windows Binary | ctsGE_1.14.0.zip |
macOS 10.13 (High Sierra) | ctsGE_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ctsGE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ctsGE |
Package Short Url | https://bioconductor.org/packages/ctsGE/ |
Package Downloads Report | Download Stats |
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