biocGraph

DOI: 10.18129/B9.bioc.biocGraph    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see biocGraph.

Graph examples and use cases in Bioinformatics

Bioconductor version: 3.11

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocGraph")

 

PDF	R Script	Examples of plotting graphs Using Rgraphviz
PDF	R Script	HOWTO layout pathways
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.1 (R-2.6) (13 years)
License	Artistic-2.0
Depends	Rgraphviz, graph
Imports	Rgraphviz, geneplotter, graph, BiocGenerics, methods
LinkingTo
Suggests	fibroEset, geneplotter, hgu95av2.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	EnrichmentBrowser
Suggests Me	BiocCaseStudies
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biocGraph_1.50.0.tar.gz
Windows Binary	biocGraph_1.50.0.zip
macOS 10.13 (High Sierra)	biocGraph_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biocGraph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biocGraph
Package Short Url	https://bioconductor.org/packages/biocGraph/
Package Downloads Report	Download Stats