DOI: 10.18129/B9.bioc.beachmat    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: 3.11

Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at>

Citation (from within R, enter citation("beachmat")):


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HTML R Script 1. Linking to beachmat from another package
HTML R Script 2. Reading data from R matrices in C++
HTML R Script 3. Writing data into R matrix objects
HTML R Script 4. Supporting arbitrary matrix classes
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 2.4.0
In Bioconductor since BioC 3.6 (R-3.4) (3 years)
License GPL-3
Imports methods, DelayedArray, BiocGenerics, Matrix
Suggests testthat, BiocStyle, knitr, rmarkdown, devtools
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me batchelor, BiocSingular, bsseq, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scater, scran, SingleR
Links To Me batchelor, BiocSingular, bsseq, DropletUtils, glmGamPoi, mbkmeans, PCAtools, scater, scran, SingleR
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