affyILM

DOI: 10.18129/B9.bioc.affyILM    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see affyILM.

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: 3.11

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyILM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyILM")

 

PDF	R Script	affyILM1.3.0
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.40.0
In Bioconductor since	BioC 2.6 (R-2.11) (10.5 years)
License	GPL-3
Depends	R (>= 2.10.0), methods, gcrma
Imports	affxparser(>= 1.16.0), affy, graphics, Biobase
LinkingTo
Suggests	AffymetrixDataTestFiles, hgfocusprobe
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyILM_1.40.0.tar.gz
Windows Binary	affyILM_1.40.0.zip
macOS 10.13 (High Sierra)	affyILM_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyILM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyILM
Package Short Url	https://bioconductor.org/packages/affyILM/
Package Downloads Report	Download Stats