Vega

DOI: 10.18129/B9.bioc.Vega    

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Vega.

An R package for copy number data segmentation

Bioconductor version: 3.11

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author: Sandro Morganella

Maintainer: Sandro Morganella <sandro at ebi.ac.uk>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Vega")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Vega")

 

PDF	R Script	Vega
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Software, aCGH
Version	1.35.0
In Bioconductor since	BioC 2.8 (R-2.13) (9.5 years)
License	GPL-2
Depends	R (>= 2.10)
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Vega_1.35.0.tar.gz
Windows Binary	Vega_1.35.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/Vega
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Vega
Package Short Url	https://bioconductor.org/packages/Vega/
Package Downloads Report	Download Stats