TreeAndLeaf

DOI: 10.18129/B9.bioc.TreeAndLeaf    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TreeAndLeaf.

An alternative to dendrogram visualization and insertion of multiple layers of information

Bioconductor version: 3.11

TreeAndLeaf package comes as an alternative to solve problems regarding dendrogram plotting, such as the lack of space when the dendrogram is too large and the need for adding more layers of information. It treats a whole dendrogram as a tree, in which the observations are represented by the leaves.

Author: Leonardo Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

Maintainer: Milena Cardoso <milenandreuzo at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")

 

HTML	R Script	TreeAndLeaf: an alternative to dendrogram visualization.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.11 (R-4.0) (0.5 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	RedeR, igraph, ape, methods
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer, geneplast
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TreeAndLeaf_1.0.0.tar.gz
Windows Binary	TreeAndLeaf_1.0.0.zip
macOS 10.13 (High Sierra)	TreeAndLeaf_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TreeAndLeaf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TreeAndLeaf
Package Short Url	https://bioconductor.org/packages/TreeAndLeaf/
Package Downloads Report	Download Stats