DOI: 10.18129/B9.bioc.RefNet    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RefNet.

A queryable collection of molecular interactions, from many sources

Bioconductor version: 3.11

Obtain molecular interactions with metadata, some archived, some dynamically queried.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at>

Citation (from within R, enter citation("RefNet")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script RefNet
PDF   Reference Manual
Text   NEWS


biocViews GraphAndNetwork, Software
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (6.5 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, PSICQUIC, AnnotationHub, RCurl, shiny
Imports BiocGenerics
Suggests RUnit, BiocStyle,
Depends On Me
Imports Me
Suggests Me RCyjs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RefNet_1.24.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) RefNet_1.24.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

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