RefNet

DOI: 10.18129/B9.bioc.RefNet    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RefNet.

A queryable collection of molecular interactions, from many sources

Bioconductor version: 3.11

Obtain molecular interactions with metadata, some archived, some dynamically queried.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RefNet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RefNet")

 

PDF	R Script	RefNet
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, Software
Version	1.24.0
In Bioconductor since	BioC 2.14 (R-3.1) (6.5 years)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, IRanges, PSICQUIC, AnnotationHub, RCurl, shiny
Imports	BiocGenerics
LinkingTo
Suggests	RUnit, BiocStyle, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RCyjs
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RefNet_1.24.0.tar.gz
Windows Binary	RefNet_1.24.0.zip
macOS 10.13 (High Sierra)	RefNet_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RefNet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RefNet
Package Short Url	https://bioconductor.org/packages/RefNet/
Package Downloads Report	Download Stats