DOI: 10.18129/B9.bioc.MicrobiotaProcess    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MicrobiotaProcess.

an R package for analysis, visualization and biomarker discovery of microbiome

Bioconductor version: 3.11

MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. In addition, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

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HTML R Script MicrobiotaProcess: basics analysis using MicrobiotaProcess.
HTML R Script MicrobiotaProcess: biomarker discovery using MicrobiotaProcess.
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biocViews FeatureExtraction, Microbiome, MultipleComparison, Software, Visualization
Version 1.0.5
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License GPL (>= 3.0)
Depends R (>= 4.0.0)
Imports ape, plyr, tidyr, ggplot2, phyloseq, magrittr, dplyr, Biostrings, ggrepel, vegan, rentrez, reshape, zoo, ggtree, tidytree, gtools, MASS, methods, randomForest, rlang, tibble, grDevices, stats, utils, coin, ggsignif, scales, Rmisc, DECIPHER, biomformat, yaml, phangorn, patchwork
Suggests DT, prettydoc, treeio, tidyverse, testthat, knitr, nlme
URL https://github.com/YuLab-SMU/MicrobiotaProcess/
BugReports https://github.com/YuLab-SMU/MicrobiotaProcess/issues
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Source Package MicrobiotaProcess_1.0.5.tar.gz
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