MetaVolcanoR

DOI: 10.18129/B9.bioc.MetaVolcanoR    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MetaVolcanoR.

Gene Expression Meta-analysis Visualization Tool

Bioconductor version: 3.11

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada at usp.br>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaVolcanoR")

 

HTML	R Script	MetaVolcanoR inputs: differential expression examples
HTML	R Script	MetaVolcanoR: Differential expression meta-analysis tool
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (1 year)
License	GPL-3
Depends	R (>= 3.6.0)
Imports	methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaVolcanoR_1.2.0.tar.gz
Windows Binary	MetaVolcanoR_1.2.0.zip
macOS 10.13 (High Sierra)	MetaVolcanoR_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaVolcanoR
Package Short Url	https://bioconductor.org/packages/MetaVolcanoR/
Package Downloads Report	Download Stats