DOI: 10.18129/B9.bioc.MTseeker    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MTseekerData.

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: 3.11

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche <tim.triche at>, Noor Sohail <tim.triche at>, Ben Johnson <tim.triche at>, Tim Vickers <tim.triche at>, Azif Zubair <tim.triche at>

Maintainer: Tim Triche <tim.triche at>

Citation (from within R, enter citation("MTseeker")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Genetics, Metabolomics, Software, VariantAnnotation
Version 1.6.0
In Bioconductor since BioC 3.8 (R-3.5) (2 years)
License GPL-3
Depends R (>= 3.5.0), GenomeInfoDb, GenomicFeatures, GenomicAlignments, VariantAnnotation
Imports xml2, utils, viridis, methods, IRanges, Biobase, jsonlite, graphics, circlize, Rsamtools, S4Vectors, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, SummarizedExperiment
Suggests MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
Depends On Me
Imports Me MTseekerData
Suggests Me
Links To Me
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