MTseeker

DOI: 10.18129/B9.bioc.MTseeker    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MTseekerData.

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: 3.11

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche <tim.triche at gmail.com>, Noor Sohail <tim.triche at gmail.com>, Ben Johnson <tim.triche at gmail.com>, Tim Vickers <tim.triche at gmail.com>, Azif Zubair <tim.triche at gmail.com>

Maintainer: Tim Triche <tim.triche at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MTseeker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Genetics, Metabolomics, Software, VariantAnnotation
Version	1.6.0
In Bioconductor since	BioC 3.8 (R-3.5) (2 years)
License	GPL-3
Depends	R (>= 3.5.0), GenomeInfoDb, GenomicFeatures, GenomicAlignments, VariantAnnotation
Imports	xml2, utils, viridis, methods, IRanges, Biobase, jsonlite, graphics, circlize, Rsamtools, S4Vectors, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests	MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	MTseekerData
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MTseeker
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MTseeker
Package Short Url	https://bioconductor.org/packages/MTseeker/
Package Downloads Report	Download Stats