MOMA

DOI: 10.18129/B9.bioc.MOMA    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MOMA.

Multi Omic Master Regulator Analysis

Bioconductor version: 3.11

This package implements the inference of candidate master regulator proteins from multi-omics' data (MOMA) algorithm, as well as ancillary analysis and visualization functions.

Author: Evan Paull [aut], Sunny Jones [aut, cre], Mariano Alvarez [aut]

Maintainer: Sunny Jones <sunnyjjones at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOMA")

 

HTML	R Script	MOMA - Multi Omic Master Regulator Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, FeatureExtraction, FunctionalGenomics, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology, Transcriptomics
Version	1.0.2
In Bioconductor since	BioC 3.11 (R-4.0) (0.5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	circlize, cluster, ComplexHeatmap, dplyr, ggplot2, graphics, grid, grDevices, magrittr, methods, MKmisc, MultiAssayExperiment, parallel, qvalue, RColorBrewer, readr, reshape2, rlang, stats, stringr, tibble, tidyr, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, viper
SystemRequirements
Enhances
URL
BugReports	https://github.com/califano-lab/MOMA/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MOMA_1.0.2.tar.gz
Windows Binary	MOMA_1.0.2.zip
macOS 10.13 (High Sierra)	MOMA_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MOMA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MOMA
Package Short Url	https://bioconductor.org/packages/MOMA/
Package Downloads Report	Download Stats