DOI: 10.18129/B9.bioc.MOFA    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MOFA.

Multi-Omics Factor Analysis (MOFA)

Bioconductor version: 3.11

Multi-Omics Factor Analysis: an unsupervised framework for the integration of multi-omics data sets.

Author: Ricard Argelaguet, Britta Velten, Damien Arnol, Florian Buettner, Wolfgang Huber, Oliver Stegle

Maintainer: Britta Velten <britta.velten at>

Citation (from within R, enter citation("MOFA")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Introduction to MOFA
HTML R Script MOFA: Application to a single-cell multi-omics data set
HTML R Script MOFA: applications to a multi-omics data set of CLL patients
HTML R Script MOFA: How to assess model robustness and do model selection
PDF   Reference Manual
Text   NEWS


biocViews Bayesian, DimensionReduction, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.9 (R-3.6) (1.5 years)
License LGPL-3 | file LICENSE
Depends R (>= 3.5)
Imports rhdf5, dplyr, reshape2, pheatmap, corrplot, ggplot2, ggbeeswarm, methods, scales, GGally, RColorBrewer, cowplot, ggrepel, MultiAssayExperiment, Biobase, doParallel, foreach, reticulate, grDevices, stats, utils
Suggests knitr, MOFAdata
SystemRequirements Python (>=2.7.0), numpy, pandas, h5py, scipy, sklearn, mofapy
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MOFA_1.4.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) MOFA_1.4.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: