MDTS

DOI: 10.18129/B9.bioc.MDTS    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MDTS.

Detection of de novo deletion in targeted sequencing trios

Bioconductor version: 3.11

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MDTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDTS")

 

HTML	R Script	Title of your vignette
PDF		Reference Manual

Details

biocViews	Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version	1.8.0
In Bioconductor since	BioC 3.7 (R-3.5) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
LinkingTo
Suggests	testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MDTS_1.8.0.tar.gz
Windows Binary	MDTS_1.8.0.zip
macOS 10.13 (High Sierra)	MDTS_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MDTS
Package Short Url	https://bioconductor.org/packages/MDTS/
Package Downloads Report	Download Stats