KEGGprofile

DOI: 10.18129/B9.bioc.KEGGprofile    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see KEGGprofile.

An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway

Bioconductor version: 3.11

KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.

Author: Shilin Zhao, Yan Guo, Yu Shyr

Maintainer: Shilin Zhao <shilin.zhao at vanderbilt.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGprofile")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGprofile")

 

PDF	R Script	KEGGprofile: Application Examples
PDF		Reference Manual
Text		NEWS

Details

biocViews	KEGG, Pathways, Software
Version	1.30.0
In Bioconductor since	BioC 2.11 (R-2.15) (8 years)
License	GPL (>= 2)
Depends
Imports	AnnotationDbi, png, TeachingDemos, XML, KEGG.db, KEGGREST, biomaRt, RCurl, ggplot2, reshape2
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	IntramiRExploreR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGprofile_1.30.0.tar.gz
Windows Binary	KEGGprofile_1.30.0.zip
macOS 10.13 (High Sierra)	KEGGprofile_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/KEGGprofile
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGprofile
Package Short Url	https://bioconductor.org/packages/KEGGprofile/
Package Downloads Report	Download Stats