EnMCB

DOI: 10.18129/B9.bioc.EnMCB    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see EnMCB.

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: 3.11

Creation of the correlated blocks using DNA methylation profiles. A stacked ensemble of machine learning models, which combined the support vector machine and elastic-net regression model, can be constructed to predict disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")

 

HTML	R Script	vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version	1.0.11
In Bioconductor since	BioC 3.11 (R-4.0) (0.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	foreach, doParallel, parallel, stats, survivalROC, glmnet, survivalsvm, ggplot2, minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, survival, utils
LinkingTo
Suggests	SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, prognosticROC
SystemRequirements
Enhances
URL
BugReports	https://github.com/whirlsyu/EnMCB/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EnMCB_1.0.11.tar.gz
Windows Binary	EnMCB_1.0.11.zip
macOS 10.13 (High Sierra)	EnMCB_1.0.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EnMCB
Package Short Url	https://bioconductor.org/packages/EnMCB/
Package Downloads Report	Download Stats