DAPAR

DOI: 10.18129/B9.bioc.DAPAR    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see DAPAR.

Tools for the Differential Analysis of Proteins Abundance with R

Bioconductor version: 3.11

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [cre,aut], Florence Combes [aut], Thomas Burger [aut], Cosmin Lazar [ctb], Alexia Dorffer [ctb], Anais Courtier [ctb], Enora Fremy [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DAPAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPAR")

 

PDF	R Script	Prostar user manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.20.3
In Bioconductor since	BioC 3.2 (R-3.2) (5 years)
License	Artistic-2.0
Depends	R (>= 4.0.0), foreach, parallel, doParallel, igraph
Imports	MSnbase, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, stringr, grDevices, graphics, openxlsx, utils, cp4p (>= 0.3.5), scales, Matrix, vioplot, imp4p (>= 0.8), highcharter (>= 0.7.0), DAPARdata(>= 1.16.0), siggenes, graph, lme4, readxl, clusterProfiler, dplyr, tidyr, AnnotationDbi, tidyverse, vsn, FactoMineR, factoextra, visNetwork
LinkingTo
Suggests	BiocGenerics, Biobase, testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	Prostar
Suggests Me	DAPARdata
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DAPAR_1.20.3.tar.gz
Windows Binary	DAPAR_1.20.3.zip
macOS 10.13 (High Sierra)	DAPAR_1.20.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DAPAR
Package Short Url	https://bioconductor.org/packages/DAPAR/
Package Downloads Report	Download Stats