ConsensusClusterPlus

DOI: 10.18129/B9.bioc.ConsensusClusterPlus    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ConsensusClusterPlus.

ConsensusClusterPlus

Bioconductor version: 3.11

algorithm for determining cluster count and membership by stability evidence in unsupervised analysis

Author: Matt Wilkerson <mdwilkerson at outlook.com>, Peter Waltman <waltman at soe.ucsc.edu>

Maintainer: Matt Wilkerson <mdwilkerson at outlook.com>

Citation (from within R, enter citation("ConsensusClusterPlus")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ConsensusClusterPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ConsensusClusterPlus")

 

PDF R Script ConsensusClusterPlus Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Software
Version 1.52.0
In Bioconductor since BioC 2.6 (R-2.11) (10.5 years)
License GPL version 2
Depends
Imports Biobase, ALL, graphics, stats, utils, cluster
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me CancerSubtypes, CATALYST, CrossICC, CVE, DEGreport, DeSousa2013, FlowSOM
Suggests Me TCGAbiolinks
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ConsensusClusterPlus_1.52.0.tar.gz
Windows Binary ConsensusClusterPlus_1.52.0.zip
macOS 10.13 (High Sierra) ConsensusClusterPlus_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ConsensusClusterPlus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ConsensusClusterPlus
Package Short Url https://bioconductor.org/packages/ConsensusClusterPlus/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: